The Council meets on the third Thursday of each month, at 4:00 p.m., to discuss policy and procedural matters relevant to the school. These meetings are open to the public and the agenda is posted in front of the school 72 hours in advance. Parents may submit agenda items for discussion.

In addition, Willits Charter School has a director/principal whose job is to implement the policies of the Council and to oversee the day-to-day operations of the school.